IN THE PRESS

• ​​Hanly JJ. In the Spotlight - Postdoc. Journal of Experimental Zoology Part B: Molecular and Developmental Evolution [link] [pdf]
• Hanly*, Loh* et al. won the Development’s 2023 Outstanding Paper Prize.
  A brief interview with Joe Hanly, Ling Loh and Arnaud Martin. Development. 2024; 151, dev202948. [link] [pdf] 
  Watch the Webinar on Youtube [link]
• Coverage of the ivory/miR193 preprints, including Livraghi et al. 2023 and Fandino et al. 2023 
  - Pennisi E. Surprise RNA paints colorful patterns on butterfly wings. Science. 2024 Mar 8;383(6687):1039-1040      ------[click image for pdf]------>
  - Cisneros I. preLights. 10.1242/prelights.36968 [link]

​Updated list of publication from Arnaud Martin available on Google Scholar

2021-2025

• Livraghi L, Hanly JJ, Evans E, Wright CJ, Loh LS, Mazo-Vargas A, Kamrava K, Carter A, van der Heijden ESM, Reed RD, Papa R, Jiggins CD, Martin A. A long non-coding RNA at the cortex locus controls adaptive colouration in butterflies. Proceedings of the National Academy of Sciences. 2024 Sep 3;121(36):e2403326121. [link] [pdf] [Supp.Mat.]
• Loh LS, DeMarr KA, Heryanto C, Tsimba M, Berrio A, Patel NH, Martin A, Wray GA, McMillan WO, Hanly JJ. Lepidopteran scale cells derive from sensory organ precursors through a canonical lineage. bioRxiv. 2024:2024-05. [link]
• Mazo-Vargas A, Liang A, Liang B, McDonald J, Martin A, Reed RD. Combinatorial Wnt Signaling induces Margin Color Elements in Swallowtail Butterfly Ground Plan. bioRxiv. 2024:2024-05. [link]
• Tendolkar A, Mazo-Vargas A, Livraghi L, Hanly JJ, Van Horne KC, Gilbert LE, Martin A. Cis-regulatory modes of Ultrabithorax inactivation in butterfly forewings.  eLife. 2024 Jan 23; 12:RP90846. [link]
• ​Ficarrotta V, Martin A, Counterman BA, Pyron RA. Early origin and diverse phenotypic implementation of iridescent UV patterns for sexual signaling in pierid butterflies. Evolution. 2023 Dec 01; 77(12):2619-2630. [link] [pdf]
• Hanly JJ*, Loh LS*, Mazo-Vargas A, Rivera-Miranda TS, Livraghi L, Tendolkar A, Day CR, Liutikaite N, Earls EA, Corning OB, D'Souza N, Hermina-Perez JJ, Mehta C, Ainsworth JA, Rossi M, Papa R, McMillan WO, Perry MW, Martin A. Frizzled2 receives WntA signaling during butterfly wing pattern formation. Development. 2023 Sep 15;150(18). [link] [pdf]
• Cicconardi F, Milanetti E, Pinheiro de Castro EC, Mazo-Vargas A, Van Belleghem SM, Ruggieri AA, Rastas P, Hanly JJ, Evans E, Jiggins CD, McMillan WO, Papa R, Di Marino D, Martin A, Montgomery SH. Evolutionary dynamics of genome size and content during the adaptive radiation of Heliconiini butterflies. Nature Communications. 2023 Sep 12; 14(5620) [link] [pdf]
• Hanly JJ, Francescutti CM, Loh LS, Corning OB, Long DJ, Nakatani MA, Porter AH, Martin A. Genetics of yellow-orange color variation in a pair of sympatric sulfur butterflies. Cell Reports. 2023 Aug 29;42(8). [link] [pdf]
• Elkin J, Martin A, Courtier‐Orgogozo V, Santos ME. Analysis of the genetic loci of pigment pattern evolution in vertebrates. Biological Reviews. 2023 Apr 5. [link] [pdf]​
• Tunström K, Woronik A, Hanly JJ, Rastas P, Chichvarkhin A, Warren AD, Kawahara AY, Schoville SD, Ficarrotta V, Porter AH, Watt WB, Martin A, Wheat CW. Evidence for a single, ancient origin of a genus-wide alternative life history strategy. Science Advances. 2023 Mar 22;9(12):eabq3713. [link] [pdf]
• Van Belleghem SM, Ruggieri AA, Concha C, Livraghi L, Hebberecht L, Rivera ES, Ogilvie JG, Hanly JJ, Warren IA, Planas S, Ortiz-Ruiz Y, Reed R, Lewis JJ, Jiggins CD, Counterman BA, McMillan WO, Papa R. High level of novelty under the hood of convergent evolution. Science. 2023 Mar 9; 379: 1043-1049. [link] [pdf]
• Heryanto C, Mazo-Vargas A, Martin A. Efficient hyperactive piggyBac transgenesis in Plodia pantry moths. Frontiers in Genome Editing. 2022 Dec 23;4:57. [link] [pdf]
• Thulluru A, Saad L, Nagah Abdou Y, Martin A, Kee HL. CRISPR in butterflies: An undergraduate lab experience to inactivate wing patterning genes during development. Biochemistry and Molecular Biology Education. 2022 Nov;50(6):605-19. [link] [pdf]
• Mazo-Vargas A, Langmüller AM, Wilder A, van der Burg KR, Lewis JJ, Messer PW, Zhang L, Martin A, Reed RD. Deep cis-regulatory homology of the butterfly wing pattern ground plan. Science. 2022 Oct 21;378(6617):304-8. [link] [pdf]
• Francescutti CM, Hanly JJ, Martin A. Knockdowns of red Malpighian tubules reveal pigmentation roles in the milkweed bug. Journal of Experimental Zoology Part B: Molecular and Developmental Evolution. 2022 February 3; 1-6. [link] [pdf]​
• Hanly JJ, Livraghi L, Heryanto C, McMillan WO, Jiggins CD, Gilbert LE, Martin A. A large deletion at the cortex locus eliminates butterfly wing patterning. Genes, Genomes, Genetics. 2022 January 31; jkac021. [link] [pdf]
• Heryanto C, Hanly JJ, Mazo-Vargas A, Tendolkar A, Martin A. Mapping and CRISPR homology-directed repair of a recessive white eye mutation in Plodia moths. iScience. 2022 March 18; 25: 103885. [link] [pdf]
• Ficarrotta V*, Hanly JJ*, Loh LS, Francescutti CM, Ren A, Tunstrom K, Wheat CW, Porter AH, Counterman BA, and Martin A. A genetic switch for male UV iridescence in an incipient species pair of sulphur butterflies. Proceedings of the National Academy of Sciences.  2022 Jan 18; 119(3):e2109255118. [link] [pdf]
• Hanly J, Robertson ECN, Corning OBWH, Martin A. Porcupine/Wntless‐dependent trafficking of the conserved WntA ligand in butterflies. Journal of Experimental Zoology Part B: Molecular and Development Evolution. 2021 May; 1–12. [link] [pdf]
• Tendolkar A, Pomerantz AF, Heryanto C, Shirk PD, Patel NH, Martin A. Ultrabithorax Is a Micromanager of Hindwing Identity in Butterflies and Moths. Frontiers in Ecology and Evolution. 2021 Mar 9; 643661: 1-14. [link] [pdf]
• Ren A*, Day CR*, Hanly JJ, Counterman BA, Morehouse NI, Martin A. Convergent Evolution of Broadband Reflectors Underlies Metallic Coloration in Butterflies. Frontiers in Ecology and Evolution. 2020 June 30; 8: 206. [link] [pdf]
• Fenner J, Benson C, Rodriguez-Caro L, Ren A, Papa R, Martin A, Hoffmann F, Range R and Counterman BA. Wnt Genes in Wing Pattern Development of Coliadinae Butterflies.  Frontiers in Ecology and Evolution. 2020 June 30; 8:197. [link] [pdf]

2016-2020

​

• Rodriguez-Caro F,  Fenner J, Bhardwaj S, Cole J, Benson C, Colombara AM, et al. Novel Doublesex Duplication Associated with Sexually Dimorphic Development of Dogface Butterfly Wings. Molecular Biology and Evolution 38 (11), 5021-5033. [link] [pdf]
• Livraghi L, Hanly JJ, Van Belleghem SM, Montejo-Kovacevich G, van Der Heijden ESM, Loh LS, et al. Cortex cis-regulatory switches establish scale colour identity and pattern diversity in Heliconius. Elife 10, e68549. [link] [pdf]
• Courtier-Orgogozo V, Arnoult L, Prigent SR, Wiltgen S, Martin A. Gephebase, a Database of Genotype-Phenotype Relationships for natural and domesticated variation in Eukaryotes. Nucleic Acid Research. 2019 Sep ; pii: gkz796. [link] [pdf]
• Martin A, Wolcott NS, O'Connell LA. Bringing immersive science to undergraduate laboratory courses using CRISPR gene knockouts in frogs and butterflies. Journal of Experimental Biology. 2020 Feb 1;223(Suppl_1):jeb208793. [link] [pdf]
• Courtier-Orgogozo V, Martin A. The coding loci of evolution and domestication: current knowledge and implications for bio-inspired genome editing. Journal of Experimental Biology. 2020 Feb 1;223(Suppl_1):jeb208934. [link] [pdf]
• Day CR, Hanly JH, Ren A, Martin A. Sub‐micrometer insights into the cytoskeletal dynamics and ultrastructural diversity of butterfly wing scales, Developmental Dynamics. 2019 Aug; 248(8):657-670. [link] [pdf]
• van der Burg KRL, Lewis JJ, Martin A, Nijhout HF, Danko CG, Reed RD. Contrasting Roles of Transcription Factors Spineless and EcR in the Highly Dynamic Chromatin Landscape of Butterfly Wing Metamorphosis. Cell Report. 2019 Apr 23;27(4):1027-1038.e3. [link] [pdf]
• Courtier-Orgogozo V, Martin A. Predicting the genetic loci of past evolution. Book Chapter in The culture of predictability and the nature of the unpredictable. Life, evolution, behavior. 2018; Eds. Ceccarelli D & Frezza G, Rome, CNR Edizioni. [link] [pdf]
• Livraghi L, Martin A, Gibbs M, Braak N, Arif S, Breuker CJ. CRISPR/Cas9 as the Key to Unlocking the Secrets of Butterfly Wing Pattern Development and Its Evolution. Advances in Insect Physiology. 2017 Dec. Review. [link] [pdf]
• Mazo-Vargas A, Concha C*, Livraghi L*, Massardo D*, Wallbank R*, Zhang L, Papador JD, Martinez- Najera D, Kronforst MR, Breuker CJ, Reed RD, Patel NH, McMillan WO, Martin A. Macro-evolutionary shifts of WntA function potentiate butterfly wing pattern diversity.  Proceedings of the National Academy of Sciences USA 2017 Oct; 114(40):10701-10706. [link] [pdf]
• Martin A, Courtier-Orgogozo V. Morphological evolution repeatedly caused by mutations in signaling ligand genes. Book Chapter in T. Sekimura, F. Nijhout (eds.), Diversity and Evolution of Butterfly Wing Patterns; Springer Singapore, 2017. [link] [pdf]
• Zhang L, Martin A, Perry MW, van der Burg KR, Matsuoka Y, Monteiro A, Reed RD. Genetic Basis of Melanin Pigmentation in Butterfly Wings. Genetics. 2017 Apr; 205(4):1537-1550. [link] [pdf]

2011-2015

• Martin A, Serano JM, Jarvis E, Bruce HS, Wang J, Ray S, Barker CA, O’Connell LC, Patel NH. CRISPR/Cas9 mutagenesis reveals versatile roles of Hox genes in crustacean limb specification and evolution. Current Biology. 2015 Dec; pii: S0960-9822(15)01415-3. [link] [pdf]
• Serano JM, Martin A, Liubicich DM, Jarvis E, Bruce HS, La K, Browne WE, Grimwood J, Patel NH. Comprehensive analysis of Hox gene expression in the amphipod crustacean Parhyale hawaiensis. Developmental Biology. 2015 Nov; S0012-1606(15)30166-4. [link] [pdf]
• Orgogozo V, Morizot B, Martin A. The differential view of genotype-phenotype relationships. Frontiers in Genetics. 2015 May; 6:179. Review. [link] [pdf]
• Huber B, Whibley A, Poul YL, Navarro N, Martin A, Baxter S, Shah A, Gilles B, Wirth T, McMillan WO, Joron M. Conservatism and novelty in the genetic architecture of adaptation in Heliconius butterflies. Heredity. 2015 Mar; 114(5):515-524. [link] [pdf]
• Martin A, Reed RD. Wnt signaling underlies evolution and development of butterfly wing pattern symmetry systems. Developmental Biology. 2014 Nov; 395(2):367-378. [link] [pdf]
• Gallant JR, Imhoff VE, Martin A, Savage WK, Chamberlain NL, Pote BL, Peterson C, Smith G, Evans B, Reed RD, Kronforst MK, Mullen SP. Ancient homology underlies adaptive mimetic diversity across butterflies. Nature Communications 2014 Sep; 5(4817). [link] [pdf]
• Kunte K*, Zhang W*, Tenger-Trolander A, Palmer D, Martin A, Reed RD, Mullen SP, Kronforst MR. Doublesex is a mimicry supergene. Nature 2014 Mar; 507(7491): 229-232. [link] [pdf]
• Martin A, McCulloch KJ, Patel NH, Briscoe AD, Gilbert LE, Reed RD. Multiple recent co-options of Optix associated with novel traits in adaptive butterfly wing radiations. EvoDevo 2014 Feb; 5:7. [link] [pdf]
• Orgogozo V, Martin A. Evolution and Development: Genes and Mutations underlying Phenotypic Variation. Oxford Bibliographies Online: Evolutionary Biology 2014 Jan; doi: 10.1093/obo/9780199941728-0003. Review. [link]
• Martin A, Orgogozo V.  The loci of repeated evolution: a catalog of genetic hotspots of phenotypic variation. Evolution 2013 May; 67: 1235–1250. Review. [link] [pdf]
• Martin A, Papa R, Nadeau NJ, Hill RI, Counterman BA, Halder G, Jiggins CD, Kronforst MR, Long AD, McMillan WO*, Reed RD*. Diversification of complex butterfly wing patterns by repeated regulatory evolution of WntA. Proceedings of the National Academy of Sciences USA. 2012 Jul; 109(31):12632-12637. [link] [pdf]
• The Heliconius Genome Consortium. A butterfly genome reveals promiscuous exchange of mimicry adaptations among species. Nature. 2012 Jul; 487(7405):94-98. [link] [pdf]
• ​Reed RD*, Papa R*, Martin A, Hines HM, Counterman BA, Pardo-Diaz C, Jiggins CD,  Chamberlain NL, Kronforst MR, Chen R, Halder G, Nijhout HF, McMillan WO. optix drives the repeated convergent evolution of butterfly wing pattern mimicry. Science. 2011 Aug; 333:1137-1141. [link] [pdf]

2006-2010

• ​Martin A, Reed RD. wingless and aristaless2 define a developmental ground plan for moth and butterfly wing pattern evolution. Molecular Biology and Evolution. 2010 Dec; 27(12):2864-2878. [link] [pdf]
• McDonald  WP*, Martin A*, Reed RD. Butterfly wings shaped by a molecular cookie cutter: Evolutionary radiation of lepidopteran wing shapes associated with a derived Cut / wingless wing margin boundary system. Evolution and Development. 2010 May; 12:296-304. [link] [pdf]
• McGowan L, Kuo E, Martin A, Monuki ES, Striedter G. Species differences in early patterning of the avian brain. Evolution. 2010 Mar; 65(3):907-911. [link] [pdf]
• Pantalacci S, Sémon M, Martin A, Chevret P, Laudet V. Heterochronic shifts explain variations in a sequentially developing repeated pattern: palatal ridges of muroid rodents. Evolution and Development. 2009 Jul-Aug; 11(4):422-433. [link] [pdf]
• Pantalacci S, Prochazka J*, Martin A*, Rothova M, Lambert A, Bernard L, Charles C, Viriot L, Peterkova R and Laudet V. Patterning of palatal rugae through sequential addition reveals anterior-posterior boundary in palatal development. BMC Developmental Biology. 2008 Dec ; 8(1):116. [link] [pdf]
• Papa R*, Martin A*, Reed RD. Genomic hotspots of adaptation in butterfly wing pattern evolution. Current Opinion in Genetics and Development. 2008 Dec; 18(6):559-564. Review. [link] [pdf]
• Chevalier S, Martin A, Leclère L, Amiel A, Houliston E. Polarised expression of FoxB and FoxQ2 genes during development of the hydrozoan Clytia hemisphaerica. Development Genes and Evolution. 2006 Nov; 216(11):709. [link] [pdf]