* = equal contribution

year 2016-2020

​

• Courtier-Orgogozo V, Arnoult L, Prigent SR, Wiltgen S, Martin A. Gephebase, a Database of Genotype-Phenotype Relationships for natural and domesticated variation in Eukaryotes. Nucleic Acid Research. 2019 Sep ; pii: gkz796. [link] [pdf]
• Martin A, Wolcott NS, O’Connell LA. Bringing immersive science to undergraduate laboratory courses using CRISPR gene knockouts in frogs and butterflies. Journal of Experimental Biology. 2019 (accepted article, in press). [link] [pdf]
• Courtier-Orgogozo V, Martin A. The Coding Loci of Evolution and Domestication: Current Knowledge and Implications for Bio-Inspired Genome Editing. Journal of Experimental Biology. 2019 (accepted article, in press). [link] [pdf]
• Day CR, Hanly JH, Ren A, Martin A. Sub‐micrometer insights into the cytoskeletal dynamics and ultrastructural diversity of butterfly wing scales, Developmental Dynamics. 2019 Aug; 248(8):657-670. [link] [pdf]
• van der Burg KRL, Lewis JJ, Martin A, Nijhout HF, Danko CG, Reed RD. Contrasting Roles of Transcription Factors Spineless and EcR in the Highly Dynamic Chromatin Landscape of Butterfly Wing Metamorphosis. Cell Report. 2019 Apr 23;27(4):1027-1038.e3. [link] [pdf]
• Courtier-Orgogozo V, Martin A. Predicting the genetic loci of past evolution. Book Chapter in The culture of predictability and the nature of the unpredictable. Life, evolution, behavior. 2018; Eds. Ceccarelli D & Frezza G, Rome, CNR Edizioni. [link] [pdf]
• Livraghi L, Martin A, Gibbs M, Braak N, Arif S, Breuker CJ. CRISPR/Cas9 as the Key to Unlocking the Secrets of Butterfly Wing Pattern Development and Its Evolution. Advances in Insect Physiology. 2017 Dec. Review. [link] [pdf]
• Mazo-Vargas A, Concha C*, Livraghi L*, Massardo D*, Wallbank R*, Zhang L, Papador JD, Martinez- Najera D, Kronforst MR, Breuker CJ, Reed RD, Patel NH, McMillan WO, Martin A. Macro-evolutionary shifts of WntA function potentiate butterfly wing pattern diversity.  Proceedings of the National Academy of Sciences USA 2017 Oct; 114(40):10701-10706. [link] [pdf]
• Martin A, Courtier-Orgogozo V. Morphological evolution repeatedly caused by mutations in signaling ligand genes. Book Chapter in T. Sekimura, F. Nijhout (eds.), Diversity and Evolution of Butterfly Wing Patterns; Springer Singapore, 2017. [link] [pdf]
• Zhang L, Martin A, Perry MW, van der Burg KR, Matsuoka Y, Monteiro A, Reed RD. Genetic Basis of Melanin Pigmentation in Butterfly Wings. Genetics. 2017 Apr; 205(4):1537-1550. [link] [pdf]

year 2011-2015

• Martin A, Serano JM, Jarvis E, Bruce HS, Wang J, Ray S, Barker CA, O’Connell LC, Patel NH. CRISPR/Cas9 mutagenesis reveals versatile roles of Hox genes in crustacean limb specification and evolution. Current Biology. 2015 Dec; pii: S0960-9822(15)01415-3. [link] [pdf]
• Serano JM, Martin A, Liubicich DM, Jarvis E, Bruce HS, La K, Browne WE, Grimwood J, Patel NH. Comprehensive analysis of Hox gene expression in the amphipod crustacean Parhyale hawaiensis. Developmental Biology. 2015 Nov; S0012-1606(15)30166-4. [link] [pdf]
• Orgogozo V, Morizot B, Martin A. The differential view of genotype-phenotype relationships. Frontiers in Genetics. 2015 May; 6:179. Review. [link] [pdf]
• Huber B, Whibley A, Poul YL, Navarro N, Martin A, Baxter S, Shah A, Gilles B, Wirth T, McMillan WO, Joron M. Conservatism and novelty in the genetic architecture of adaptation in Heliconius butterflies. Heredity. 2015 Mar; 114(5):515-524. [link] [pdf]
• Martin A, Reed RD. Wnt signaling underlies evolution and development of butterfly wing pattern symmetry systems. Developmental Biology. 2014 Nov; 395(2):367-378. [link] [pdf]
• Gallant JR, Imhoff VE, Martin A, Savage WK, Chamberlain NL, Pote BL, Peterson C, Smith G, Evans B, Reed RD, Kronforst MK, Mullen SP. Ancient homology underlies adaptive mimetic diversity across butterflies. Nature Communications 2014 Sep; 5(4817). [link] [pdf]
• Kunte K*, Zhang W*, Tenger-Trolander A, Palmer D, Martin A, Reed RD, Mullen SP, Kronforst MR. Doublesex is a mimicry supergene. Nature 2014 Mar; 507(7491): 229-232. [link] [pdf]
• Martin A, McCulloch KJ, Patel NH, Briscoe AD, Gilbert LE, Reed RD. Multiple recent co-options of Optix associated with novel traits in adaptive butterfly wing radiations. EvoDevo 2014 Feb; 5:7. [link] [pdf]
• Orgogozo V, Martin A. Evolution and Development: Genes and Mutations underlying Phenotypic Variation. Oxford Bibliographies Online: Evolutionary Biology 2014 Jan; doi: 10.1093/obo/9780199941728-0003. Review. [link] [pdf]
• Martin A, Orgogozo V.  The loci of repeated evolution: a catalog of genetic hotspots of phenotypic variation. Evolution 2013 May; 67: 1235–1250. Review. [link] [pdf]
• Martin A, Papa R, Nadeau NJ, Hill RI, Counterman BA, Halder G, Jiggins CD, Kronforst MR, Long AD, McMillan WO*, Reed RD*. Diversification of complex butterfly wing patterns by repeated regulatory evolution of WntA. Proceedings of the National Academy of Sciences USA. 2012 Jul; 109(31):12632-12637. [link] [pdf]
• The Heliconius Genome Consortium. A butterfly genome reveals promiscuous exchange of mimicry adaptations among species. Nature. 2012 Jul; 487(7405):94-98. [link] [pdf]
• ​Reed RD*, Papa R*, Martin A, Hines HM, Counterman BA, Pardo-Diaz C, Jiggins CD,  Chamberlain NL, Kronforst MR, Chen R, Halder G, Nijhout HF, McMillan WO. optix drives the repeated convergent evolution of butterfly wing pattern mimicry. Science. 2011 Aug; 333:1137-1141. [link] [pdf]

Year 2006-2010

• ​Martin A, Reed RD. wingless and aristaless2 define a developmental ground plan for moth and butterfly wing pattern evolution. Molecular Biology and Evolution. 2010 Dec; 27(12):2864-2878. [link] [pdf]
• McDonald  WP*, Martin A*, Reed RD. Butterfly wings shaped by a molecular cookie cutter: Evolutionary radiation of lepidopteran wing shapes associated with a derived Cut / wingless wing margin boundary system. Evolution and Development. 2010 May; 12:296-304. [link] [pdf]
• McGowan L, Kuo E, Martin A, Monuki ES, Striedter G. Species differences in early patterning of the avian brain. Evolution. 2010 Mar; 65(3):907-911. [link] [pdf]
• Pantalacci S, Sémon M, Martin A, Chevret P, Laudet V. Heterochronic shifts explain variations in a sequentially developing repeated pattern: palatal ridges of muroid rodents. Evolution and Development. 2009 Jul-Aug; 11(4):422-433. [link] [pdf]
• Pantalacci S, Prochazka J*, Martin A*, Rothova M, Lambert A, Bernard L, Charles C, Viriot L, Peterkova R and Laudet V. Patterning of palatal rugae through sequential addition reveals anterior-posterior boundary in palatal development. BMC Developmental Biology. 2008 Dec ; 8(1):116. [link] [pdf]
• Papa R*, Martin A*, Reed RD. Genomic hotspots of adaptation in butterfly wing pattern evolution. Current Opinion in Genetics and Development. 2008 Dec; 18(6):559-564. Review. [link] [pdf]
• Chevalier S, Martin A, Leclère L, Amiel A, Houliston E. Polarised expression of FoxB and FoxQ2 genes during development of the hydrozoan Clytia hemisphaerica. Development Genes and Evolution. 2006 Nov; 216(11):709. [link] [pdf]